PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020734.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 278aa    MW: 30159.7 Da    PI: 9.5912
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020734.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.53.4e-3634120287
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 
                  a+k+++++++h kv+gR+RR+R++a+caar+F+L++eLG ++d++ti+WLlqqa+p+i+++tgt++ +as+   a++s+s+++ns s
  CCG020734.1  34 APKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGNKSDGETIQWLLQQAEPSIIAATGTGTFPASALaVAGTSVSEQGNSVS 120
                  789*************************************************************99999777644444444443332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.2E-3039132IPR005333Transcription factor, TCP
PROSITE profilePS5136926.3514094IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MPEKNINNHN KQPAEIKDFQ IMIENRDHNK KQLAPKRSSN KDRHKKVDGR GRRIRMPALC  60
AARIFQLTRE LGNKSDGETI QWLLQQAEPS IIAATGTGTF PASALAVAGT SVSEQGNSVS  120
SGLHTKMEGL GPAVVGSRDR TSWTMMNTNL GRSNVASGVW PSVGGIGSGF VPNSGQSTSN  180
FGNDNSTTLP KYGFHGVELP NINMGLMSFY SMFSGTNQQF PGLELGLSQD GHSGMFNPQA  240
LNPFCQQMVQ GRGVLNSLNQ EQQQEQPPDK DDSQGSRQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00641PBMTransfer from Manes.12G007700Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036116.10.0PREDICTED: transcription factor TCP20-like
RefseqXP_011036117.10.0PREDICTED: transcription factor TCP20-like
SwissprotQ9LSD51e-67TCP20_ARATH; Transcription factor TCP20
TrEMBLB9GZD61e-158B9GZD6_POPTR; Uncharacterized protein
STRINGPOPTR_0003s16630.11e-157(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33393269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.11e-68TCP family protein